AdjustInFile.java:    public AdjustInFile() 
AdjustInFile.java:    public File doAdjust(File old) throws IOException
AdjustInFile.java:    private String removeBracket(String s)
AscFilter.java:    //private static final int MAX_PARAMETERS = 13; // # parameters +1 (also applies to MSG)
AscFilter.java:    private boolean skip; // flag : is an item to be skipped (Filtering IV)
AscFilter.java:    private boolean skip_MessageFrames; // flag: True = outside a messageframe (Filtering I)
AscFilter.java:    private int timeSetting; // Specs: Time setting (-1 default)
AscFilter.java:    private TrialItemCollection trialItems = new TrialItemCollection(); // Specs: Merging
AscFilter.java:    public AscFilter(DataSharing dsi,MasterScripts ms,
AscFilter.java:    public void filter() throws IOException
AscFilter.java:    public void doFiltering(final String startMessage,
AscFilter.java:    public void writeTokens(String startMessage,
AscFilter.java:    private boolean checkMessageOrImage(String startMessage,String[] tokens)
AscFilter.java:    public String[] doMergingMessageTrial(String startMessage,String[] tokens)
AscFilter.java:    public String[] doMergingImageTrial(String startMessage,String[] tokens)
AscFilter.java:    public void itemsOfInterestCheck(String[] tokens)
AscFilter.java:    public TrialItem(){}
AscFilter.java:    public TrialItem(int nr,double ux,double uy,double lx,double ly,String name,double ta,double tb)
AscFilter.java:    public int getItemNr(){return itemNr;}
AscFilter.java:    public double getItemUpperLeftX(){return itemUpperLeftX;}
AscFilter.java:    public double getItemUpperLeftY(){return itemUpperLeftY;}
AscFilter.java:    public double getItemLowerRightX(){return itemLowerRightX;}
AscFilter.java:    public double getItemLowerRightY(){return itemLowerRightY;}
AscFilter.java:    public String getItemName(){return itemName;}
AscFilter.java:    public void setItemUpperLeftX(double newItemUpperLeftX)
AscFilter.java:    private Vector trialItemsVector = new Vector(10,50);
AscFilter.java:    public TrialItemCollection(){array=false;}
AscFilter.java:    public TrialItem getTrialItem(int number)
AscFilter.java:    public void newTrialItem(TrialItem newItem) { trialItemsVector.add(newItem);}
AscFilter.java:    public void setSize() {trialItemsVector.trimToSize();}
AscFilter.java:    public int getSize()
AscFilter.java:    public void aquireTrialItem(int parameterOffset, String[] tokens,
AscFilter.java:    public void dispose() {trialItemsVector.clear();}
AscFilter.java:    public void toArray()
AscFilter.java:    public void addSpaces()
AscFilter.java:    private Vector lineVector = new Vector(50,50);
AscFilter.java:    public DataPooling(String oor,String fix,String bl,int tSF,int mp)
AscFilter.java:    public void addNewLine(StringTokenizer tokenLine)
AscFilter.java:    public String[] getNextLine()
AscFilter.java:    public String[] getLine(int number)
AscFilter.java:    public int getSize() {return lineVector.size();}
AscFilter.java:    private void removeLine(int number)
AscFilter.java:    private void replaceLine(int number,String[] replacement)
AscFilter.java:    public boolean getReadOn()
AscFilter.java:    public int doDataPooling(boolean eof)
AscFilter.java:    private int poolDownward(int shortFixation,int toCheckFixation)
AscFilter.java:    private int poolUpward(int shortFixation,int toCheckFixation)
AscFilter.java:    private boolean angleCalculation(int fixationA,int fixationB)
AscFilter.java:    private void mergeFixations(int toMerge,int mergeWith)
AscFilter.java:    public int doBlinks(int storeWriteUpTo)
AscFilter.java:    public boolean doOutOfRange(int storeWriteUpTo)
BMPLoader.java:    public static int constructInt(byte[] in,int offset) {
BMPLoader.java:    public static int constructInt3(byte[] in,int offset) {
BMPLoader.java:    public static short constructShort(byte[] in,int offset) {
BMPLoader.java:        public void read(FileInputStream fs) throws IOException 
BMPLoader.java:  public static Image read(FileInputStream fs) 
BMPLoader.java:    public static Image  load(String sdir, String sfile) {
BMPLoader.java:    public static Image  load(String sdir) 
DPIFilter.java:    private static final int MAX_PARAMETERS = 20; // # parameters +1 (also applies to MSG)
DPIFilter.java:    public DPIFilter()
DPIFilter.java:    public static void main(String[] args)
DataSharing.java:    //private boolean skip; // flag : is an item to be skipped (Filtering IV)
DataSharing.java:    private String channel; // Specs: Filtering III (L,R,BOTH)
DataSharing.java:    private String dataOfInterest; //Specs: Filtering II (EFIX; ESACC; BOTH; NONE)
DataSharing.java:    //private boolean skip_MessageFrames; // flag: True = outside a messageframe (Filtering I)
DataSharing.java:    //private int timeSetting; // Specs: Time setting (-1 default)
DataSharing.java:    //private TrialItemCollection trialItems = new TrialItemCollection(); // Specs: Merging
DataSharing.java:    private String blinks; // SPECS: Data pooling -> How to treat blinks(DONT ALTER, ADD, REMOVE)
DataSharing.java:	private boolean wordSetToZero; // noun Set To Zero time (specified in the MasterScripts)
DataSharing.java:    private boolean timeSettingDialog; // was Dialog canceled or did it end on ok(Back)
DataSharing.java:    public DataSharing(int max_mes,int max_ioi,int max_p)
DataSharing.java:    public void setInFile(File in) throws IOException
DataSharing.java:    public void setOutFile(File out) throws IOException
DataSharing.java:    public void setLogFile(File log) throws IOException
DataSharing.java:    public void setChannel(String ch) {channel=ch;}
DataSharing.java:    public void setDataOfInterest(String doi) {dataOfInterest=doi;}
DataSharing.java:    public void setTimeSettingStart(String tss) {timeSettingStart=tss;}
DataSharing.java:    public void setToleranceAbove(double ta) {toleranceAbove=ta;}
DataSharing.java:    public void setToleranceBelow(double tb) {toleranceBelow=tb;}
DataSharing.java:    public void setFixations(String f) {fixations=f;}
DataSharing.java:    public void setBlinks(String b) {blinks=b;}
DataSharing.java:    public void setTooShortFixation(int tsf) {tooShortFixation=tsf;}
DataSharing.java:    public void setItemsOfInterest(String[] ioi) {itemsOfInterest=ioi;}
DataSharing.java:    public void setMessageFrames(String[] mf) {messageFrames=mf;}
DataSharing.java:    public void setTrackerMessages(String [] tm) {trackerMessages=tm;}
DataSharing.java:    public void setFromMessageFrame(String from) {fromMessageFrame=from;}
DataSharing.java:    public void setToMessageFrame(String to) {toMessageFrame=to;}
DataSharing.java:    public void setOutOfRange(String oor) {outOfRange=oor;}
DataSharing.java:    public void setPupilSize(boolean ps) {pupilSize=ps;}
DataSharing.java:    public void setWordSetToZero(boolean wstz) {wordSetToZero=wstz;}
DataSharing.java:    public void setTimeSettingDialog(boolean ok) {timeSettingDialog=ok;}
DataSharing.java:    public void setMessageFramesDialog(boolean ok) {messageFramesDialog=ok;}
DataSharing.java:    public void setItemsOfInterestDialog(boolean ok) {itemsOfInterestDialog=ok;}
DataSharing.java:    public void setBackupTextAreaOutput(String ta) {backupTextArea_Output=ta;}
DataSharing.java:    public void setBackupTextAreaInput(String ta) {backupTextArea_Input=ta;}
DataSharing.java:    public void setBackupTextAreaLog(String ta) {backupTextArea_Log=ta;}
DataSharing.java:    public void setOutBackup(File f) {outBackup=f;}
DataSharing.java:	public void setAbortedTrialFound() {abortedTrialFound=true;} 
DataSharing.java:    public BufferedReader getInFile() {return inFile;}
DataSharing.java:    public PrintWriter getOutFile() {return outFile;}
DataSharing.java:    public PrintWriter getLogFile() {return logFile;}
DataSharing.java:    public File getInBackup() {return inBackup;}
DataSharing.java:    public File getOutBackup() {return outBackup;}
DataSharing.java:    public File getLogBackup() {return logBackup;}
DataSharing.java:    public String getChannel() {return channel;}
DataSharing.java:    public String getDataOfInterest() {return dataOfInterest;}
DataSharing.java:    public String getTimeSettingStart() {return timeSettingStart;}
DataSharing.java:    public double getToleranceAbove() {return toleranceAbove;}
DataSharing.java:    public double getToleranceBelow() {return toleranceBelow;}
DataSharing.java:    public String getFixations() {return fixations;}
DataSharing.java:    public String getBlinks() {return blinks;}
DataSharing.java:    public int getTooShortFixation() {return tooShortFixation;}
DataSharing.java:    public String[] getItemsOfInterest() {return itemsOfInterest;}
DataSharing.java:    public String[] getMessageFrames() {return messageFrames;}
DataSharing.java:    public String[] getTrackerMessages() {return trackerMessages;}
DataSharing.java:    public String getFromMessageFrame(){return fromMessageFrame;}
DataSharing.java:    public String getToMessageFrame(){return toMessageFrame;}
DataSharing.java:    public int getMax_ItemsOfInterest() {return max_itemsofinterest;}
DataSharing.java:    public int getMax_Messages() {return max_messages;}
DataSharing.java:    public int getMax_Parameters() {return max_parameters;}
DataSharing.java:    public String getOutOfRange() {return outOfRange;}
DataSharing.java:    public boolean getPupilSize() {return pupilSize;}
DataSharing.java:	public boolean getWordSetToZero() {return wordSetToZero;}
DataSharing.java:    public boolean getTimeSettingDialog() {return timeSettingDialog;}
DataSharing.java:    public boolean getMessageFramesDialog() {return messageFramesDialog;}
DataSharing.java:    public boolean getItemsOfInterestDialog() {return itemsOfInterestDialog;}
DataSharing.java:    public String getScannedChannel() {return scannedChannel;}
DataSharing.java:    public Vector getScannedItemsOfInterest() {return scannedItemsOfInterest;}
DataSharing.java:    public Vector getScannedTrackerMessages() {return scannedTrackerMessages;}
DataSharing.java:    public Vector getScannedMessageFrames() {return scannedMessageFrames;}
DataSharing.java:    public String getBackupTextAreaOutput() {return backupTextArea_Output;}
DataSharing.java:    public String getBackupTextAreaInput() {return backupTextArea_Input;}
DataSharing.java:    public String getBackupTextAreaLog() {return backupTextArea_Log;}
DataSharing.java:    public int getLineCount() {return lineCount;}
DataSharing.java:	public boolean isAbortedTrialFound() {return abortedTrialFound;}
DataSharing.java:    public void resetMessageFrames()
DataSharing.java:    public void resetItemsOfInterest()
DataSharing.java:    public void resetFiles() throws IOException
DataSharing.java:    public void completeReset()
DataSharing.java:    public String setOutFileName(String name,String suffix,String type) throws IOException
DataSharing.java:	public void createFiles() throws IOException
DataSharing.java:    public void closeInFile() throws IOException {if(inFile!=null) inFile.close();}
DataSharing.java:    public void closeOutFile() throws IOException {if(outFile!=null) outFile.close();}
DataSharing.java:    public void closeLogFile() throws IOException {if(logFile!=null) logFile.close();}
DataSharing.java:    public void closeAll() throws IOException
DataSharing.java:    public void DataToString()
DataSharing.java:    public String getPath(String whatFile) throws IOException
DataSharing.java:    public void scanInputFile() throws IOException
DataSharing.java:    public void setProgressBarCurrent(int i) {progressBarCurrent=i;}
DataSharing.java:    public int getProgressBarCurrent() {return progressBarCurrent;}
DataSharing.java:    public void setProgressBar(JProgressBar pb,JPanel p)
DataSharing.java:    public void manageProgressBar(int i)
DataSharing.java:    public void updateProgressBar(int p)
DataSharing.java:    public void createLogFile() throws IOException
DataSharing.java:    public boolean saveOptionTemplate(File file)
DataSharing.java:    public boolean openOptionTemplate(File file)
DataSharing.java:    private String stripLine(String line)
FilterGUI.java:    private static final int MAX_PARAMETERS = 20; // # parameters +1 (also applies to MSG)
FilterGUI.java:    public FilterGUI()
FilterGUI.java:    private void initComponents()
FilterGUI.java:		public void windowClosing(WindowEvent evt)
FilterGUI.java:    public JTextArea addTextArea(String title)
FilterGUI.java:    private JRadioButton addRadioButton(JPanel buttonPanel,
FilterGUI.java:    private JCheckBox addCheckBox(JPanel p, String name,boolean v)
FilterGUI.java:    private JButton addButton(Container c,String s,boolean add)
FilterGUI.java:    private void addGridBagComponent(Container cont,
FilterGUI.java:    public static JMenu makeMenu(Object parent, int hotkey, Object[] items, Object target)
FilterGUI.java:    public static JMenuItem makeMenuItem(Object item, Object target)
FilterGUI.java:    private void fillComboboxes()
FilterGUI.java:    private boolean isRegular(String frame, Vector scFra)
FilterGUI.java:    private void addToComboBox(String message)
FilterGUI.java:    public void manageDocumentMenu(String action,int number,File f) throws IOException
FilterGUI.java:    public void resetComponents()
FilterGUI.java:    public void set_Enabled(boolean set,String what)
FilterGUI.java:    public void actionPerformed(ActionEvent evt)
FilterGUI.java:    public void insertUpdate(DocumentEvent e)
FilterGUI.java:    public void removeUpdate(DocumentEvent e)
FilterGUI.java:    public void changedUpdate(DocumentEvent e)
FilterGUI.java:    public void setIntField()
FilterGUI.java:    public String getFiles(String whatDialog)
FilterGUI.java:				public boolean accept(File f)
FilterGUI.java:				public String getDescription(){return "Asc-Files";}
FilterGUI.java:				public boolean accept(File f)
FilterGUI.java:				public String getDescription(){return "Flt-Files";}
FilterGUI.java:				public boolean accept(File f)
FilterGUI.java:				public String getDescription(){return "Log-Files";}
FilterGUI.java:                            public boolean accept(File f)
FilterGUI.java:                            public String getDescription(){return "Flt-Files";}
FilterGUI.java:    public File getTemplateFile(String whatDialog)
FilterGUI.java:			public boolean accept(File f)
FilterGUI.java:			public String getDescription(){return "CFG-Files";}
FilterGUI.java:    public boolean startAscFilter() //throws IOException
FilterGUI.java:    public boolean startMultiAscFilter() throws IOException
FilterGUI.java:    public boolean getGUIReadOut()
FilterGUI.java:    public void fillOutputWindows()
FilterGUI.java:    public void fillOutputWindowFromFile(String what,File f,
FilterGUI.java:    public JTextArea getOutputWindow() {return jTextArea_Output;}
FilterGUI.java:    private void paintDocument(int number) throws IOException
FilterGUI.java:    public void goToPosition(int position)
FilterGUI.java:    public void highlight(int start, int end)
FilterGUI.java:    public void prepareOutputText(String string)
FilterGUI.java:    public void erasePreviousLinePointer(String string,int position)
FilterGUI.java:    public void setPointer(String string,int position)
FilterGUI.java:    public void setFixationPointer(int last,int start)
FilterGUI.java:    public void showTab(String whatTab)
FilterGUI.java:    public int countRows(String string,int start)
FilterGUI.java:    public int getCurrentDocument(){return currentDocument;}
FilterGUI.java:    private void showErrorMessage(String message, String title)
FilterGUI.java:    public int getMax_ItemsOfInterest() {return MAX_ITEMSOFINTEREST;}
FilterGUI.java:    public int getMax_Messages() {return MAX_MESSAGES;}
FilterGUI.java:    public int getMax_Parameters() {return MAX_PARAMETERS;}
FilterGUI.java:    private void exitForm(WindowEvent evt)
FilterGUI.java:    private void debugging(boolean stringOrFile)
FilterGUI.java:    private JLabel jLabel1 = new JLabel("Minimum Fixation Duration (ms) :");
FilterGUI.java:    //private  JTextField jTextField = new JTextField("100",5);
FilterGUI.java:    private IntTextField jTextField = new IntTextField(100,5);
FilterGUI.java:    private JPanel panelTSF = new JPanel();
FilterGUI.java:    private ButtonGroup groupTSF = new ButtonGroup();
FilterGUI.java:    private JLabel jLabel2 = new JLabel("Fixations Below Minimum :");
FilterGUI.java:    private JPanel panelOORF = new JPanel();
FilterGUI.java:    private ButtonGroup groupOORF = new ButtonGroup();
FilterGUI.java:    private JLabel jLabel3 = new JLabel("Out-Of-Range Fixations :");
FilterGUI.java:    private JPanel panelOK = new JPanel();
FilterGUI.java:    private JButton ok = addButton(panelOK,"Back",true);
FilterGUI.java:    private JButton cancel = addButton(panelOK,"Cancel",true);
FilterGUI.java:    public DataPoolingDialog(JFrame parent, final DataSharing dsi)
FilterGUI.java:    public DataPoolingDialog(JDialog parent, final DataSharing dsi)
FilterGUI.java:    public void initComponents()
FilterGUI.java:    public void actionPerformed(ActionEvent evt)
FilterGUI.java:    private JRadioButton addRadioButton(JPanel buttonPanel,
FilterGUI.java:    private JButton addButton(Container c,String s,boolean add)
FilterGUI.java:    public void showDialog()
FilterGUI.java:    private JPanel panelCheckBoxes = new JPanel();
FilterGUI.java:    private JPanel panelButtons = new JPanel();
FilterGUI.java:    private JButton ok = addButton(panelButtons,"Back",true);
FilterGUI.java:    private JButton cancel = addButton(panelButtons,"Cancel",true);
FilterGUI.java:    private JLabel spaceContainer = addLabel(panelButtons,"                   ");
FilterGUI.java:    private JButton all = addButton(panelButtons,"All",true);
FilterGUI.java:    private JButton none = addButton(panelButtons,"None",true);
FilterGUI.java:    public MessageFrameDialog(JFrame parent, DataSharing dsi)
FilterGUI.java:    public MessageFrameDialog(JDialog parent, DataSharing dsi)
FilterGUI.java:    public void initComponents()
FilterGUI.java:    public void actionPerformed(ActionEvent evt)
FilterGUI.java:    private JCheckBox addCheckBox(JPanel p, String name)
FilterGUI.java:    private JButton addButton(Container c,String s,boolean add)
FilterGUI.java:    private JLabel addLabel(Container c,String s)
FilterGUI.java:    public void showDialog(boolean show)
FilterGUI.java:    private void setCheckboxes(JPanel p)
FilterGUI.java:    private void setSelection(boolean set,String what)
FilterGUI.java:    private JPanel panelRadioButton = new JPanel();
FilterGUI.java:    private ButtonGroup group = new ButtonGroup();
FilterGUI.java:    private JPanel panelNorth = new JPanel();
FilterGUI.java:	private JPanel panelWordZero = new JPanel();
FilterGUI.java:	private JPanel panelWordZeroYesNo = new JPanel();
FilterGUI.java:	private JLabel jLabel_WordZero = new JLabel("Word Set To Zero");
FilterGUI.java:	private ButtonGroup group_WordZero = new ButtonGroup();
FilterGUI.java:	private JPanel panelCenter = new JPanel();
FilterGUI.java:	private JLabel label = new JLabel("Set to Zero with each message of type");
FilterGUI.java:    private JPanel panelButtons = new JPanel();
FilterGUI.java:    private JButton ok = addButton(panelButtons,"Back",true);
FilterGUI.java:    private JButton cancel = addButton(panelButtons,"Cancel",true);
FilterGUI.java:    public TimeSettingDialog(JFrame parent, DataSharing dsi)
FilterGUI.java:    public TimeSettingDialog(JDialog parent, DataSharing dsi)
FilterGUI.java:    public void initComponents()
FilterGUI.java:    public void actionPerformed(ActionEvent evt)
FilterGUI.java:    private JRadioButton addRadioButton(JPanel buttonPanel,
FilterGUI.java:    private JButton addButton(Container c,String s,boolean add)
FilterGUI.java:    private JLabel addLabel(Container c,String s)
FilterGUI.java:	public void setWordZero()
FilterGUI.java:	private void setRadiobuttons(JPanel p)
FilterGUI.java:    public void showDialog()
FilterGUI.java:    private JPanel panelCheckboxes = new JPanel();
FilterGUI.java:    private JLabel label = new JLabel("Select Trial Items");
FilterGUI.java:    private JPanel panelButtons = new JPanel();
FilterGUI.java:    private JButton ok = addButton(panelButtons,"Back",true);
FilterGUI.java:    private JButton cancel = addButton(panelButtons,"Cancel",true);
FilterGUI.java:    private JLabel spaceContainer = addLabel(panelButtons,"                   ");
FilterGUI.java:    private JButton all = addButton(panelButtons,"All",true);
FilterGUI.java:    private JButton none = addButton(panelButtons,"None",true);
FilterGUI.java:	private JTextField jTextField_Search = new JTextField(10);
FilterGUI.java:    public ItemsOfInterestDialog(JFrame parent, DataSharing dsi,Vector ti)
FilterGUI.java:    public ItemsOfInterestDialog(JDialog parent, DataSharing dsi,Vector ti)
FilterGUI.java:    public void initComponents()
FilterGUI.java:				public void actionPerformed(ActionEvent e) {
FilterGUI.java:    public void actionPerformed(ActionEvent evt)
FilterGUI.java:	public void keyPressed(KeyEvent evt)
FilterGUI.java:    public void keyTyped(KeyEvent evt){	}
FilterGUI.java:    public void keyReleased(KeyEvent evt){}
FilterGUI.java:    public void showDialog(boolean show)
FilterGUI.java:    private JCheckBox addCheckBox(JPanel p, String name)
FilterGUI.java:    private JButton addButton(Container c,String s,boolean add)
FilterGUI.java:    private JLabel addLabel(Container c,String s)
FilterGUI.java:    private void setCheckboxes(JPanel p)
FilterGUI.java:    private void setSelection(boolean set)
FilterGUI.java:	private void searchMatch(String pattern)
FilterGUI.java:    private boolean checkPattern(String where, String pattern, String checkb)
FilterGUI.java:	private void getItemPatterns() throws IOException
FilterGUI.java:	private void setItemPatterns()
FilterGUI.java:	private void showErrorMessage(String message, String title)
FilterGUI.java:    public IntTextField(int defval, int size)
FilterGUI.java:    public boolean isValid()
FilterGUI.java:    public int getValue()
FilterGUI.java:    public void insertString(int offs, String str, AttributeSet a)
FilterGUI.java:    public DoubleTextField(double defval, int size)
FilterGUI.java:    public boolean isValid()
FilterGUI.java:    public double getValue()
FilterGUI.java:    public void insertString(int offs, String str, AttributeSet a)
FilterGUI.java:    public ProgressDialog(JFrame parent,Vector dataSharing,MasterScripts ms)
FilterGUI.java:    public ProgressDialog(JFrame parent,Vector dataSharing,FilterGUI g,
FilterGUI.java:    public void initComponents()
FilterGUI.java:		public void windowOpened(WindowEvent evt)
FilterGUI.java:    private void start()
FilterGUI.java:    private void calculateMax(Vector dataSharingInterface)
FilterGUI.java:    public ProgressThread(JDialog f, JLabel l,int m,Vector dsi,MasterScripts ms)
FilterGUI.java:    public ProgressThread(JDialog f, JLabel l,FilterGUI g,Vector dsi,
FilterGUI.java:    public void run()
FilterGUI.java:    public void createProgBar(String title) throws IOException
FilterGUI.java:    public void doFiltering() throws IOException
FilterGUI.java:    public void doLoading() throws IOException
FilterGUI.java:    public void updateProgressBar(int p)
FilterGUI.java:    public void reset()
FilterGUI.java:    public void cleanup()
FilterGUI.java:    private void fillOutputWindowFromFile(String what,File f,
FilterGUI.java:    private Vector fileVector = new Vector(10,10);
FilterGUI.java:    private JPanel panelOK = new JPanel();
FilterGUI.java:    private JButton ok = addButton(panelOK,"Back",true);
FilterGUI.java:    private JButton cancel = addButton(panelOK,"Cancel",true);
FilterGUI.java:    public SetMasterScriptDialog(JFrame parent, MasterScripts ms, String p)
FilterGUI.java:    public void initComponents()
FilterGUI.java:    public void actionPerformed(ActionEvent evt)
FilterGUI.java:    private JButton addButton(Container c,String s,boolean add)
FilterGUI.java:    private JLabel addLabel(Container c,String s)
FilterGUI.java:    public void showDialog()  throws IOException
FilterGUI.java:    public MasterScripts getScripts()
FilterGUI.java:    public void addFiles()
FilterGUI.java:				public boolean accept(File f)
FilterGUI.java:				public String getDescription(){return "Script-Files";}
FilterGUI.java:   private void eraseFile()
Fixations.java:    public Fixations()
Fixations.java:    public Vector getList(){ return fixations; }
Fixations.java:    public Object getPrevious()
Fixations.java:    public Object getNext()
Fixations.java:    public FixationTrialID findTrial(String tr)
Fixations.java:    public boolean isFixation(Object tmp)
Fixations.java:    public boolean isNextFixation()
Fixations.java:    public boolean isPriorFixation()
Fixations.java:    public Hashtable aquire(String outputString,double ab,double bel)
Fixations.java:    public void correctFixation(String trialid,int cX, int cY)
Fixations.java:    public void print()
Fixations.java:	public SingleFixation()
Fixations.java:	public SingleFixation(int n,int c, int e, int tx, int ty, String mc)
Fixations.java:	public void setX(int tx){ x=tx; }
Fixations.java:	public void setY(int ty){ y=ty; }
Fixations.java:        public void setCorrectionX(int tx)
Fixations.java:	public void setCorrectionY(int ty)
Fixations.java:	public int getX(){ return x; }
Fixations.java:	public int getY(){ return y; }
Fixations.java:	public int getLineNumber(){ return lineNumber; }
Fixations.java:	public int getCharacterLineNumber()
Fixations.java:	public int getCharacterEndNumber()
Fixations.java:	public String getMouseclick() { return mouseclick; }
Fixations.java:	public FixationTrialID(int n,int c,int e,String na)
Fixations.java:	public String getName(){ return name; }
Fixations.java:	public int getLineNumber(){ return lineNumber; }
Fixations.java:	public int getCharacterLineNumber()
Fixations.java:	public int getCharacterEndNumber()
ImageLoader.java:    public static Image  load(String sdir, String sfile) {
ImageLoader.java:    public static Image  load(String sdir) 
MasterScripts.java:     public MasterScripts(Vector fa)
MasterScripts.java:     public MasterScripts()
MasterScripts.java:     public String getScriptFileName(int number) throws IOException
MasterScripts.java:     public int getCurrentTrial() { return currentTrial; }
MasterScripts.java:     public int getSize(){ return scripts.size(); }
MasterScripts.java:     public Vector getMasterScripts(){ return (Vector)scripts.clone(); }
MasterScripts.java:     public String getScriptName(int number) throws IOException
MasterScripts.java:     public int getWordSetToZero(int number)
MasterScripts.java:     public int getOffset(int n) 
MasterScripts.java:     public void arrayToVector(File[] fileArray)
MasterScripts.java:     private void scanScriptFiles() throws IOException
MasterScripts.java:     public boolean checkMasterScriptDatabase(String trialid)
MasterScripts.java:     public String getTemplate_Name() { return (String)templateVector.get(currentTrial); }
MasterScripts.java:     public String getScriptPath(int number) throws IOException
MasterScripts.java:     public TrialItemImage getTemplate(int width,int height) throws IOException
MasterScripts.java:     public int getCurrentWordSetToZero() { return getWordSetToZero(currentTrial); }
MasterScripts.java:     public int getCurrentOffset() { return getOffset(currentTrial); }
MasterScripts.java:	public String stripDirectory (String str)
MasterScripts.java:     public boolean saveScripts()
MasterScripts.java:     public boolean loadScripts()
MasterScripts.java:     public void print()
PCXLoader.java:    public static int constructPal(byte[] in, int offset) {
PCXLoader.java:    public static int constructShort(byte[] in, int offset) {
PCXLoader.java:        public void read(byte [] contents)
PCXLoader.java:  public static Image read(RandomAccessFile raf)
PCXLoader.java:    public static Image  load(String sdir, String sfile) {
PCXLoader.java:    public static Image  load(String sdir)
ScriptTest.java:	public static void main(String[] args)
SecondPassFilter.java:	public SecondPassFilter(DataSharing ds) throws IOException
SecondPassFilter.java:	private void eraseAborted() throws IOException
SecondPassFilter.java:	private void writeLines() throws IOException
SystemAdjustment.java:    public SystemAdjustment()
SystemAdjustment.java:    public void setDimension(Container c)
SystemAdjustment.java:    public int getWidth() {return width;}
SystemAdjustment.java:    public int getHeight() {return height;}
SystemAdjustment.java:    public String getSystem() {return system;}
SystemAdjustment.java:    public static void setGlobalFont(String fontname, String fs)
TextObject.java:    public TextObject(int uX, int uY, int lX, int lY,String n) 
TextObjectCollection.java:    public TextObjectCollection() 
TextObjectCollection.java:    public void addItem(int uX, int uY, int lX, int lY,String n)
TextObjectCollection.java:    public int getSize(){return toc.size();}
TextObjectCollection.java:    public TextObject getItem(int i){return (TextObject)toc.get(i);}
TextObjectCollection.java:    public void addSpaces()
TrialIDWindow.java:    private JPanel panelRadiobuttons = new JPanel();
TrialIDWindow.java:    private ButtonGroup buttonGroup = new ButtonGroup();
TrialIDWindow.java:    public TrialIDWindow()
TrialIDWindow.java:    public TrialIDWindow(Vector ti,String t,VisualizeImage vi,
TrialIDWindow.java:    public void initComponents()
TrialIDWindow.java:			public void windowClosing(WindowEvent evt)
TrialIDWindow.java:    private JButton addButton(Container c,String s,boolean add)
TrialIDWindow.java:    private JRadioButton addRadioButton(JPanel buttonPanel,
TrialIDWindow.java:    private void setRadioButtons(JPanel p,ButtonGroup bg)
TrialIDWindow.java:    public void actionPerformed(ActionEvent evt)
TrialIDWindow.java:   public void changeTrialID(String trialid) throws IOException
TrialIDWindow.java:    public VisualizeImage getImageViewWindow(){return imageViewWindow;}
TrialIDWindow.java:    public void setImageViewWindow(VisualizeImage vi){imageViewWindow=vi;}
TrialIDWindow.java:    private void moveToPosition_OutputWindow(String trialid)
TrialIDWindow.java:    	private void exitForm(WindowEvent evt)
TrialItemImage.java:    public TrialItemImage()
TrialItemImage.java:    public TrialItemImage(String p, String f,int w,int h,int offs)
TrialItemImage.java:    public void setImage() throws IOException
TrialItemImage.java:    public int getWidth(){ return width; }
TrialItemImage.java:    public int getHeight(){ return height; }
TrialItemImage.java:    public int getRegionnumber(int x, int y)
TrialItemImage.java:    public String getColorName(int rn) // simplified 5/2005 - EA
VisualizeImage.java:    private int width, height;	// size of canvas (display), not of embedded image!
VisualizeImage.java:    private Hashtable toc;		// text objects (words)
VisualizeImage.java:    public VisualizeImage()
VisualizeImage.java:    public VisualizeImage(String p, String f, FilterGUI g, DataSharing d,
VisualizeImage.java:    public void setImage(String p, String f, String ct, int offs) throws IOException
VisualizeImage.java:    private double scaleImage()
VisualizeImage.java:    public void initComponents()
VisualizeImage.java:		public void windowClosing(WindowEvent evt)
VisualizeImage.java:    // public boolean isFocusTraversable() { return true; }
VisualizeImage.java:    private JButton addButton(JComponent c,String s,boolean add, int hotkey)
VisualizeImage.java:    private void setEnable(boolean set)
VisualizeImage.java:    private void mySetVisible(boolean set)
VisualizeImage.java:    public void actionPerformed(ActionEvent evt)
VisualizeImage.java:    public void keyPressed(KeyEvent evt)
VisualizeImage.java:    public void keyTyped(KeyEvent evt){	}
VisualizeImage.java:    public void keyReleased(KeyEvent evt){}
VisualizeImage.java:    public void mousePressed(MouseEvent evt)
VisualizeImage.java:    public void mouseDragged(MouseEvent evt)
VisualizeImage.java:    public void mouseClicked(MouseEvent evt){}
VisualizeImage.java:    public void mouseMoved(MouseEvent evt)
VisualizeImage.java:    public void adjustmentValueChanged(AdjustmentEvent evt)
VisualizeImage.java:    public boolean isFocusable(){return  true;}
VisualizeImage.java:    private void doButtonNext()
VisualizeImage.java:	private void doButtonPrevious()
VisualizeImage.java:	private void doButtonAll()
VisualizeImage.java:	private void doButtonClear()
VisualizeImage.java:	private void doButtonToggleLines() // new 5/2005 EA
VisualizeImage.java:	private void doButtonOrigin()
VisualizeImage.java:	private void doButtonCreate()
VisualizeImage.java:    public void updateStats()
VisualizeImage.java:    private void moveToPosition_OutputWindow(int start, int end)
VisualizeImage.java:    public void correctOutputFile(String outputString, File f,
VisualizeImage.java:    // was: private String correctLine(String l, TrialItemImage trialItemImage)
VisualizeImage.java:    private String correctLine(String l, int xCorr, int yCorr)
VisualizeImage.java:    private int checkMessageOrImage(int startX,int startY)
VisualizeImage.java:    private BufferedImage createImage(Image i, int offs) // create image of same size as the
VisualizeImage.java:    private void exitForm(WindowEvent evt)
VisualizeImage.java:    public void disposeImagePanel()	// new 5/2005
VisualizeImage.java:    // public ImagePanel(Image i,int fps,TextObjectCollection toc,int offset,
VisualizeImage.java:    public ImagePanel(Image i, int fps, TextObjectCollection toc,
VisualizeImage.java:    public void paintComponent(Graphics g)
VisualizeImage.java:    public void setMode(String m)
VisualizeImage.java:    public String getMode(){ return mode; }
VisualizeImage.java:    public void setNewPoint(int x, int y, String mc)
VisualizeImage.java:    public void erasePoints(int howMany)
VisualizeImage.java:    public void eraseAll()
VisualizeImage.java:    public void reconstructFixations(Graphics gr)
VisualizeImage.java:    public void setCorrection(int cX, int cY)
VisualizeImage.java:    public void applyCorrectionToPointList()
VisualizeImage.java:    public java.util.List getPointList() { return pointList; } // new 5/2005
VisualizeImage.java:    public FixationCoords(int tx, int ty,String mc)
VisualizeImage.java:    public int getX() { return x; }
VisualizeImage.java:    public int getY() { return y; }
VisualizeImage.java:    public String getMouseclick() { return mouseclick; }
VisualizeImage.java:    public void setCorrectionX(int tx) { x += tx; }
VisualizeImage.java:    public void setCorrectionY(int ty) { y += ty; }
